Lectures in Molecular Modeling and Computational Biochemistry Return to Previous Index John E. Wampler, Department of Biochemistry & Molecular Biology The University of Georgia Athens, GA 30602
	These lectures were developed for a series of courses presented in both regularly scheduled and special summer courses during the 1998-2000 period. Different Concepts of Molecular Structure Size Matters, Different Views of Atomic and Molecular Size Non-bonded Interactions Intra- and Inte- rmolecular Forces Parameters for Molecular Mechanics Concepts of Atom Centered Point Charges ESP Charges for Biomolecules Water Models for Molecular Mechanics Molecular Mechanics and Force Fields Protein Modeling and Computational Chemistry Issues of Protein Molecular Mechanics Minimization and Optimization Using a Forcefield Equations Molecular Dyanamics Analyzing Structures and Dynamics Comprehensive Reference List